Package: detectRUNS
Type: Package
Title: Detect Runs of Homozygosity and Runs of Heterozygosity in
        Diploid Genomes
Version: 0.9.7
Date: 2026-06-02
Authors@R: c(
    person("Filippo","Biscarini", email="filippo.biscarini@gmail.com", role=c("aut", "cre")),
    person("Paolo","Cozzi", email="paolo.cozzi@ibba.cnr.it", role="aut"),
    person("Giustino","Gaspa", email="gigaspa@uniss.it", role="aut"),
    person("Gabriele","Marras", email="gmarras@uoguelph.ca", role="aut")
  )
Description: Detection of runs of homozygosity and of heterozygosity in
        diploid genomes using two methods: sliding windows (Purcell et
        al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et
        al (2015) <doi:10.1111/age.12259>).
Depends: R (>= 3.0.0)
License: GPL-3
Encoding: UTF-8
Imports: plyr, iterators, itertools, ggplot2, reshape2, Rcpp,
        gridExtra, data.table
Suggests: testthat, knitr, rmarkdown, prettydoc
LinkingTo: Rcpp
VignetteBuilder: knitr
URL:
        https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS
BugReports: https://github.com/bioinformatics-ptp/detectRUNS/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libicu-dev
Repository: https://bioinformatics-ptp.r-universe.dev
Date/Publication: 2026-06-10 12:57:09 UTC
RemoteUrl: https://github.com/bioinformatics-ptp/detectruns
RemoteRef: HEAD
RemoteSha: 0265c4d58c71d32b42f981aa9c4049b047ee5daa
RemoteSubdir: detectRUNS
NeedsCompilation: yes
Packaged: 2026-06-10 15:19:13 UTC; root
Author: Filippo Biscarini [aut, cre],
  Paolo Cozzi [aut],
  Giustino Gaspa [aut],
  Gabriele Marras [aut]
Maintainer: Filippo Biscarini <filippo.biscarini@gmail.com>